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Blink by lavvyan

I am going to tell you a story. About Dr. McKay and how he bought an eye from me, and how that one small act led to the strangest night in my entire life.

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Cracks by cats_bum1

Rodney survives John. Pre-slash

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Disappointing Yoda by Xanthe

"When you'd only loved three living things in your entire life, you had to take care of them as best you could..."

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Duality by Burningchaos

Rodney gets captured, John goes berserk.

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Finding Home by raicara

John is a Slave who ends up the property of one Dr Rodney Mckay

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Forever Lost by Tarlan

In a city the size of lower Manhattan, it's easy to get lost....forever. (Not John or Rodney)

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In Ways You Can't Possibly Imagine by telesilla WIP

Detective John Sheppard, LVPD, is still looking for answers. But the Rodney McKay he finds is very different. Part 2

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Inukshuk by murron

Another mission-gone-south isolates Rodney and John from the rest of the team. Forced to search for an Ancient outpost, they struggle to keep each other alive until the time their kidnappers prepare to sacrifice the one and purify the other.

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Judas Doesn't Answer by Auburn

O'Neill and Woolsey arrive in Atlantis along with SG-1. Shortly thereafter, Sheppard and McKay find themselves in a race to catch a murderer.

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Make The Devil Feel Surprise by telesilla

In a dark mirror universe of our own, sixteen year old Rodney McKay is brought to Atlantis by the Chief Science Officer, his older sister Jeannie, after their parents die. While Jeannie has no real use for Rodney, Colonel Sheppard does. Now Rodney has to come to terms with the fact that not only is he Sheppard's boy toy, but also that Sheppard is a moody, paranoid sadist.

For his part, John isn't quite sure what to make of Rodney, who is an almost too perfect match for him. Just as he and Rodney carefully start to settle into a complicated relationship, a conspiracy begins to surface, forcing Rodney to take a stand.

Also Jeannie McKay/Ronon.

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Situation Normal All Fucked Up by sardonicsmiley

When Sheppard gets kidnapped, again, his captors send a disturbing message back through the 'gate. McKay doesn't take it well.

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The Casualties of Truth by trillingstar

A body is a body is a body, but blood and brains... now, those are special. Vital. The soldier, above all other men, is required to practice the greatest act " sacrifice.

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The Hard Prayer by Rheanna

John is the last man alive on Earth. Until he meets Rodney.

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The Letter with the Alternate Slash Ending by Ellex

Link to the alternate ending which has the link to the other parts.

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The Watcher by Pushkin666

Rodney McKay has taken over Atlantis as it's warlord and enslaved John Sheppard.

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The silence of the stars and of the sea by Anonymous

Rodney threatens to go back to Earth. John will do anything to make him stay, and Rodney's not above taking advantage.

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These Pages are Burning by deltacephei

This Wraith queen was different....

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To Serve And Protect by Lenore

John Sheppard/Elizabeth Weir, Rodney McKay/John Sheppard, implied John Sheppard/everybody
Right or wrong, things had always been the way they were, the intelligentsia ruling and the military serving.

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Trust Issues by sian1359

Kicked out the airforce, John works for The Trust, but he don't really trusts them. He's looking for a way out of it for himself and Rodney.

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Unlocked by propinquitine

"Your husband here will be facing Kistos in his eleventh match. No one's lasted this long in living memory. Losing to Kistos will be an honorable death for your man."

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