McKay/Sheppard thematic fic index >> Established Relationship

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10 points along a graph by lucifers-toy

Ten fantasies John Sheppard fulfilled on the way to happiness

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2.473 billion to one by darkmoore

When the Ori destroyed Earth, a secret evacuation had been going on for several months. A few hundred thousand people had been sent through the Stargate into the Pegasus galaxy, settling into new lives on different planets all around.

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A Family by Constant Vigilance

Also implied Lorne/Parrish. An injured Lorne comes out to Rodney & John comes out to Lorne.

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A Kind of Magic by 2of7

"And the winner of the Magician of the Year Award is....." There is a pause and a drum-roll.... "Rodney McKay!"

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A Knot Better Left Untied by reddwarfer

"Something's wrong with the Stargate. Our Stargate. We can't dial home."

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A Pointless Story by trillingstar

Sexy, sweaty John is one of Rodney's favorite things.

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A Richer Dust Concealed by Mirabile Dictu

Hard lands make hard people, John had once heard Andy Corrigan say, and from his experience on Truebo, he believed it.

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A Season for (Semi) Old Men by tex

"All those black clothes in our closet are finally going to be useful."

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A Walk on the Slippery Rocks by sabinelagrande

If he can't do it here, he might as well go back to pretending to be straight.

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Abscido by kellifer-fic

Sateda is a nation standing against the Wraith. Once mighty, they now rely on raids to other worlds to fill their military. On Ra-Yeda, circumstance leads to the capture of two men who may be their downfall.

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Acceptance by Macx

Fusion with Dragonriders of Pern.

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Agenda by sabinelagrande

Rodney's mind wanders off during a boring staff meeting.

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Ages and Ages Hence by Corinna

Crossover with Murphy Brown, where Joe Flanigan guest-starred. McKay/Sheppard, implied past Sheppard/Murphy.

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Aiden Ford's Bad Day by torakowalski

A drugged John outs himself and Rodney to Ford.

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Aliens Gave Them Ponies by burntsmore

Human ponies. Includes group sex and gangbang.

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Always by aqualegia

Rodney needs some comfort and John needs to know that Rodney is okay.

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An Inland Soul to the Sea by Mirabile Dictu

John's friends take the initiative on his behalf.

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Apastron by Tarlan

It's almost winter and Rodney's cold and cranky. John can fix that.

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Aphorism by elementalv

There were some duties John would rather avoid.

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Apology Accepted by DeniseV

They come out to Elizabeth (everybody else already knew).

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Awakening by Pollitt

There were a lot of things that John didn't expect when he started sleeping with Rodney.

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Awakenings by scherryzade

Rodney's the one who sleeps through the night, but not tonight...

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Baby Beautiful by Lantean_drift

Teyla & Ronon are expecting a baby.

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Baby Boom by darkmoore

"You’re pregnant and you didn’t plan on telling me? You wanted to get rid of it without ever letting me know I could have been a father? Don’t you think this should be my decision, too?"

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Baby It's Cold Outside by spikespet7

John and Rodney get some down time back on earth.

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Baby Steps by gottalovev

Don't Ask Don't Tell is history and it throws John for a loop. If he's going to come out of the closet, he'll do it at his pace.

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Backyard by fawkesielady-ed

John came home early to surprise Rodney - he's the one who is surprised.

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Beating Hearts by mayachain (ms_jvh_shuh)

Oh, David says when he emerges on the other side, stopped short by the sight of even more marines holding weapons. Missing scene: Welcoming

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Bedtime by Goddess47

"Time for bed, sweetie," John said softly, mentally crossing his fingers.

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Betrothed by Andromeda

Don't Ask Don't Tell is repelled. They come out to Elizabeth, who wants John.

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Between The Earth And The Sea by Belladonna

Fussion with Smallville. Clark/Lex first time, John/Rodney & Jack/Daniel established.

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Black Flag by jade_1459

“Every normal man must be tempted at times to spit on his hands, hoist the black flag, and begin to slit throats.” -- H.L. Mencken

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Blink by lavvyan

I am going to tell you a story. About Dr. McKay and how he bought an eye from me, and how that one small act led to the strangest night in my entire life.

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Blossom by lysambre

Blossom an orgasm with the lotus position.

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Blue by lilyleia78

Rodney hates not knowing everything, and even simple questions can lead to big truths.

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Bound and Determined by dustandroses

Rodney had been lying there, bound hand and foot, forever. Where the hell was his rescue party?

Alternate link to AO3

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Bound to Please by Barbara Thomas (url needed)

Food & light bondage.

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Boys of Summer by tex

Rodney's pretty sure that John's favorite season is summer; at least, that's where the evidence points.

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Boys of Summer by tx_tart (tex)

Rodney’s pretty sure that John’s favorite season is summer.

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Bright to See by Lady Cat

Woman!Rodney is married to John and they now have a week's vacation.

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Can't Tell You, But I Know It's Mine by mayachain (ms_jvh_shuh)

At first, when Cam blurts "I didn't know you were married," John doesn't really get what the man is talking about.

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Capitalistic Enterprise by trillingstar

John's heard that Rodney McKay is the guy to see.

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Celebrating the Fourth by wpadmirer

It just went to show how stupid love could make a person.

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Charm by Sandy

Sequel to The Ritual. Jealous: John

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City in Flight by Goddess47

They weren't a new threat to Atlantis but they now came at them with a vengeance. John knew they needed help. What they got was more than they had hoped for.

McKay/Sheppard, O'Neill/Jackson, Beckett/Emmagen, Carter/Mitchell, Lorne/Davis

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Coming Out Sideways by rosiepaw

"Let me clarify. What’s in it for me that I’m not already getting?"

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Company by dk_valentine

Jack and Daniel come to Atlantis.

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Competition by badwolf36

Trust the boys to get creative (and competitive) when it comes to toys and games.

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Concussions from Butterflies by kHo

It’s shocking and remarkable how easily John says "I love you" when they start messing around.

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Conduct Unbecoming by chelle

Caldwell asks. John tells. Elizabeth hears.

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Cool by intheblueparade

Crossover with Veronica Mars. Sheppard/McKay & Veronica/Logan.

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Cover Me by psychicvanity

"Oh, guard my soul, and deliver me! Let me not be put to shame, for I take refuge in you." Psalm 25:20, ESV

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Creativity by chelle

"Do you think we're in a sex rut?"

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Cruel Mistress by ribbon_purple

John has an important favor to ask of Ronon.

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DADT and PDAs by mischief5

By the time the new president finally got around to repealing Don't Ask, Don't Tell, Atlantis was already back in Pegasus and settled into her new (old) home.

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Dearest by lavvyan

Once a pet is fully mature, he or she is assigned to an owner; a person they are programmed to love and obey until they die.

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Decoded by danceswithgary

There are times when Rodney wakes up alone with reminders of the night before.

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Deep Water by sabinelagrande

"I already did the hard stuff," Rodney points out. "If you can take in laundry, you can do this."

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Desolate Dreamscape by Catheights

John can't sleep. Rodney offers comfort by being Rodney.

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Desolation by Bronwyn

Radek wants Rodney, but finds the truth the hard way.

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Disappointing Yoda by Xanthe

"When you'd only loved three living things in your entire life, you had to take care of them as best you could..."

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Discretion by The Grrrl

During an alien visit, Elizabeth discovers something and finds something of her own, too.

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Doctor Rodney McKay VS Tooth Decay by asyouleft

"I already tried to get Woolsey to sign off on yearly dentist visits, but I guess tooth decay isn't something he's interested in fighting."

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Dogged by lilyleia78

Rodney accidentally ends up with a dog. Unfortunately, Atlantis isn't exactly pet friendly.

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Edges by Rageprufrock (Glitterati)

In one way or another Rodney has always known he was going to lose John.

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Epicureal by Soraya

There are a few other things that Rodney won't eat

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Erotic Capital by Yin (yin_again)

He claims to "never see it coming", but that's a deliberate lie.

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Euclid's Lemma by Evangeline

Rodney, Laura and Miko become teenagers

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Evidence by kalimyre

An accident needing a visit to the infirmary outs them to Carson.

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Experimentation by darkhavens

It's hard work developing new kinks.

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Fault Lines by devikun

Before he knew it, a year passed, then another, then another, and one day he woke up and realised the likelihood of seeing any of them again was pretty much nil.

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Ficlet by The Grrrl

"Why are they in a bowl if they're not edible?"

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Five Team Play Drabbles by lilyleia78

Miscellaneous McShep Match - Team Play - Drabbles

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Forgetful by outsideth3box

John knows he's forgotten something important.

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Found by lar_laughs

Rodney gets himself into and out of trouble but no one believes him.

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Fulfilled by theeverdream

Rodney made a mistake on a mission and John got captured. Now he’s back.

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Geeks and Goons series by Liketheriver, Koschka

Alternate Google docs download for the entire series: here

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Geeks' Night Out by telesilla

Rodney wants to talk about ex-girlfriends but Ronon's more interested in Star Trek.

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General Inspection by Goddess47

General Stanley A. McChrystal got himself relieved of duty in Afghanistan on purpose. He has other problems to solve and the answer to at least one of them seems to be in Pegasus.

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Gift Horses by Maverick

“How is this all my decision? He’s your son too.”

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Good King John-ceslas! by Fenchurch

Puzzled, because there really wasn’t supposed to be anyone up here, John grabbed a pair of binoculars and focused on the figure. It was a man and he appeared to be gathering sticks.

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Good Stuff by dogeared

"Jeannie send the good stuff?"

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Grass by Selenic (selenic76)

“Bound to be summer somewhere on this planet.”

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Growing Pains by frith_in_thorns

"Sheppard, your plants are attempting to impregnate the Gate controls. I don't want to find little green wormholes skipping down the hallways any time soon."

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Guilty Until Proven by Chensuu

Big Bang 2008. Forks in the Road: Outcast - John's brother Dave somehow becomes involved with the Replicators.

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Hand Gestures by Tarlan

Atlantis makes a quick stop on the way home to Pegasus.

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Hanging By a Thread by telesilla

While on vacation, John and Rodney do a complicated scene.

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Head Veg by sheafrotherdon

"I would very much like to see the effect of a vegetable on your head," Teyla offered.

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Height Annoyance by villainny

The difference between their heights is negligible at best.

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Here I Am (Come and Take Me) by dogeared

One of them bets the other one that they can't go a whole day without kissing them

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Home Improvement by lamardeuse

“Quit moping and let me show you the joys of power tools.”

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Home In Time For Jeopardy by shakespherical

Even the defeat of the Wraith and a bright future in the Pegasus galaxy doesn’t mean that the universe isn’t ultimately random and cruel. Or that love can’t be found in the ruins of your own life.

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Home Sweet Home by Selenic (selenic76)

"John still found it hard to believe that it was their bedroom"

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Homeward Bound by asyouleft

“Are you sure? I mean, there's got to be a place for it.”

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How Much? by psychicvanity

How much suction does it take to get Nutella off one's hand?

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Hugging the Fleece by SexyCazzy

John couldn't sleep while Rodney was in the infirmary.

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Hush by Anatolia1

Rodney loses his voice, sounds send him into convulsions and could no longer read or write in human language.

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Hypocrite by astheblackrosewilt

Jack O'Neill is no hypocrite.

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I Am Kirk, Deal With It! by Kodiak Bear

John is tired of Rodney's "Kirk!" references and decides to deal with it.

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Icicle by fancyformosa

"Oh don't be stupid, I obviously meant you shouldn't touch me *now*, with those icy clammy fingers and no, no, go away, no frozen stubble either."

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In Sickness and Hotel Rooms by taste_is_sweet (Leah)

"You wouldn't know 'okay' if it came running at you with a pitchfork." Rodney smacked his hand against John's forehead and left it there through John's growling dissent. "First of all, your lungs sound like a carburetor. And second, I'm surprised you haven't burst into flames."

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In Sickness and In Health by Tarlan

Someone wants to see John dishonorably discharged.

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In for a Pound by dee_laundry

Two days, four men, one California King mattress. Sometimes two and two can add up to something more. House cross-over.

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Indoor Fireworks by julietink

"Look, we're going to be dysfunctional anyway, can't we -- be dysfunctional with the sex?"

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Inevitable by Madison

He should have seen it coming--it was inevitable.

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It Must Be Thursday by Claire

Jack hates surprises. The Atlantis expedition has a few.

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It's Growing Day by Day by telesilla

During a routine mission to check out an off-world Ancient lab, team Shep is cut off from Atlantis when the stargate is buried beneath a ton of rubble. There's another way off the planet, but getting there will not be easy.

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Julianna by Goddess47

Series of fics related to John and Rodney's daughter Julianna.

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Just So Long and Long Enough by busaikko

Dave Sheppard learns more about his brother and gets drawn into a tangle of secrets and truths.

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Kill the lights and lock the door by less_star

No kisses, but no lies either, Rodney thinks. He keeps telling himself there won’t be a next time.

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Kinky Boots by kisahawklin

Rodney didn't have a thing for boots. Until John.

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Kiss by asyouleft

There's this one time when Rodney and John are waiting in the jumper and the urge to kiss John eats away at Rodney.

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Kiss Me Not by Lady Anne

Rodney waits for Sheppard’s return after Sheppard is taken by wraith worshippers

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Knot that Kind of Sheppard by danceswithgary

Jeannie was going to have to rethink the 'two grown men can manage one little girl for three or four hours' hypothesis.

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Lace by Anonymous

John is wearing panties and Rodney doesn't take them off before fucking him, just pulls them to the side

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Lapse of Memory by The Huntress

Implied Bates/Kavanagh, Teyla/Elizabeth, Grodin/Stackhouse, Zelenka/Miko & Ford/Heightmeyer.

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Last Man Reshuffle by pir8fancier

"He earned those stars. If you put them down like the nice little impostor you are, I won’t shoot you. Maybe."

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Lighter Than Air by trillingstar

The Ml'suk have harbored a grudge for thousands of years, and they have no qualms about using Sheppard as a pawn in their manipulations. Teyla, Ronon, and Rodney have to play by the rules or risk forfeiting John's life.

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Limiter by beachlass

In a way, it's easier once Rodney's dating Jennifer.

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Linger by Zinnith

It presents certain difficulties to have an illicit affair with a person who gets up at the same time you go to bed.

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Little Victories by wickedwords

Thinking of Atlantis still hurt, but not as much as it used to. Every day was a little better, or so everyone said. Personally, John thought they were all full of shit.

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Looping Through Perversion by Chaps1870

McKay/Sheppard established relationship, McKay/Sheppard/Dex sex only, McKay/Sheppard/Beckett sex only & multiple pairings sex only.

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Lost and Found by Barb G

Once in Atlantis, where even critical emergencies had to be ranked minor, major, grave, Rodney found that if he didn't write it down, it didn't happen. Everyone knew that, everyone respected that, and it had been a near flawless system. So why was there a nagging feeling that he was forgetting something important?

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Lung by vanitashaze

Dr. Biro collects pens. And she sees things in the infirmary.

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Man Stuff by psychicvanity

John holds forth on the virtue of men versus women.

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Mark You Mine by Kyn_Moonlight

Kink: Bruising or Bitemarks.

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Measuring Time by yavannauk

John is finding it difficult to adjust to being back on Earth.

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Meeting of the Minds by kisahawklin

Criminal Minds crossover. Star Trek drinking game with another genius leads to some unexpected fun.

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Mend by mdime

John Sheppard landing in the infirmary was nothing new, but when he finds himself sidelined by mysterious injuries he can’t recall receiving it's a race against time to find the cause...and save his life.

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Messages from the Edges of Oblivion by sardonicsmiley

No one thought much about the black hole out past P33-23R, until the IOA insisted they research it. John's starting to think he liked it better when they had no contact with Earth.

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Mine by Luthien

"So, I didn't do this just so we could stand here with half a room between us and attempt to make excruciating small talk as though we don't know each other at all."

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Moments Like These by spacealpha7

Rodney wondered if there was anything hotter than watching John like this.

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Monsters, Inc by Keira Marcos

Five planets. Five monsters. Five very interesting days.

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Morning Kissing by omg_wtf_yeah

"You can keep pretending to sleep if you want, Rodney, but it’s going to get awkward in a minute."

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Mother's Day by rock-mafia

A McShep AU wherein Meredith has always been a girl and John is in love with her now more than ever.

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My Dignity's Come Undone by telesilla

John's body may be sixteen again, but he's still himself and he still wants kinky sex with Rodney.

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My Favorite Colonel by pir8fancier

AU based on the Cary Grant/Irene Dunne 1940s classic movie, "My Favorite Wife."

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No Less by mayachain (ms_jvh_shuh)

David Sheppard's POV on John's relationships.

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No Longer All Right by reddwarfer

He can remember the times they used to stand side by side on the balconies, watching the weather, the sun, the rain, the clouds. Remix of And I say It's Alright

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Nobody's Hero by sharkie335

"You stupid flyboy. Just have to risk your life at the slightest possibility. What is this, a deathwish? Are you out to kill yourself?"

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Normalcy by HYPERFocused

A continuation, of sorts, of Rodney's Emo Cat -- read that one first.

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Not Like I Ever by perspi (perspicacious)

"I'm forty-four years old," John grits out, "and I can still move my entire life in a duffel bag."

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On dying and living by Cassandra Pierson (ca_pierson)

John Sheppard missed his sword more than he'd ever thought possible. What he didn't miss were other Immortals.

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One April Day by ninefics

John and Rodney enjoy a sunny spring day.

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One of Those Days by beachlass

It's one of those days that won't end, and it doesn't matter how much coffee Rodney drinks, he just seems to be sliding further behind.

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Orchestration by Pollitt

Only John Sheppard could shrug with his shoulders, eyebrows *and* his hair, and look both devious and innocent at the same time.

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Out in the Open by xparrot

It's Situation Normal for the team when they're caught in an avalanche, but digging themselves out uncovers more than they counted on.

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Out of Sight by julietink

"Rodney, relax. It's not a gun, and it doesn't work anyway."

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Out of the Blue by dee_laundry

"And now they’re having their picture taken together. What is this, the prom?" House cross-over.

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Out of the Closet, Into the Fire by delphia2000

Jack knew things were going to happen when he greeted Daniel with a kiss while they were right in the middle of a hall in the Pentagon.

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Override by velocitygrass

John had learned that when Rodney was working in his lab, it was hard to get his attention.

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Pain in the Ass by andieshep

Rodney has a real problem with arrows.

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Plugged by Goddess47

John's grin faltered for a moment and he blushed. "Cleaning gutters?"

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Pocket Full of Kryptonite by margarks

Big Bang 2008. Forks in the Road: Outcast - John goes back to Earth with Rodney instead of Ronon.

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Priceless by Goddess47

Of course, John makes the sacrifice....

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Professional Jealousy by bironic

Tyson may have the fame, but Rodney's got something special of his own.

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Proof of Intimacy by mezzo_cammin

John really should have known better than to challenge Rodney, especially when it involved their sex life.

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Protector by curia_regis

From one war into another, Atlantis watches over her people.

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Rainbow Connection by perspi (perspicacious)

John doesn't know when, exactly, guns became a turn-on.

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Rainy Days by elizaria

When it's rainy and cold and he misses the halls of Atlantis and the way she'd turn up the heat for his morning shower; Rodney's POV: When the Rain Lets Up

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Reboot by mischief5

"Dave and the girls" and weren't those verbal air quotes so cute? "don't do Reboot."

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Red Stripes by wolfshark (sharkie)

Rodney couldn't believe that John had actually agreed to this.

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Remember When by danceswithgary

John tells a story about two men, a chair, and an orange fleece jacket.

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Repercussions by crazy-obsessed

John is captured by Kolya. Rodney goes to the extreme to rescue him.

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Rescuing Rodney by Helenkacan (aka Helena K)

Rodney's not quite all there because of an accident with -- what else -- Ancient tech. John can't really do anything for him but wait. During the waiting comes the despair, writing and hoping.

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Resignation by Yin (yin_again)

Just when you think you’ve managed to figure shit out -- that’s exactly when you run into a civilization of garden gnomes.

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Return to Normalcy by chelle

Rules change. John wants to come out, Rodney doesn't.

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Rodney's Emo Cat by argosy

John is jealous of Rodney's blue cat. Sequel here: Normalcy

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SGA Academic AU Snippet by 9zanite

"You look suspiciously happy for a man who's supposed to have spent the afternoon writing an exam," John commented.

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Sanguine (Blood on the Tide) by gothphyle

John thought he was used to the dangers of Pegasus, but he never anticipated this.

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Satellites 1 by mandysbitch

He has nothing to fear but fear itself - and the sky falling on his head.

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Say it With a Sharpie by telesilla

Maybe, John thinks, Rodney doesn't even know the word is there. After all, who looks at the back of their own shoulder?

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Serendipity Lost by ribbon_purple

“Did you know the weather’s always the same here? Absolutely perfect all the time.”

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Seven Day Fool by reddwarfer

So, in the end, the only way to equal it out was to hurt them all.

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Sheppard's sense of snow by rosiepaw

"Very funny. What are you wearing as the outermost layer on your upper body?"

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Sheppardology 101 by neevebrody

He's practically made a science of knowing where to touch, when to linger and when to move on.

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Short Handed by trillingstar

"No hands," John grates out. "It's your turn, and you owe me."

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Shrapnel in his Skin by Claire

He can't go to Teyla with this. And there's a hundred reasons why it can't be Lorne.

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Single Handed by Quasar

Rodney loses a hand but it grows back eventually. Child abuse implied.

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Situation Normal All Fucked Up by sardonicsmiley

When Sheppard gets kidnapped, again, his captors send a disturbing message back through the 'gate. McKay doesn't take it well.

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Skips a generation by velocitygrass

As it turns out, John and Rodney's grandfathers knew each once once...

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Slave to Love by shao_fu

Sheppard has disappeared and Rodney and the team must find him before something terrible happens.

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Slow Side of Indifference by ladyholder

When Earth became indifferent to them, Atlantis and the people who loved her looked for ways to make things work. And then Earth tried to change the rules.

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Snow Day by HYPERFocused

"No fair. I didn't make you this snow for you to use it for nefarious purposes"

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Snowflake by Helenkacan (aka Helena K)

Rodney brings John home for their third Christmas vacation together.

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So Many Possibilities by asyouleft

"Appendix, Sheppard, appendix. I shouldn’t have been surprised, I mean you’ve broken every bone in your body-"

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Something About John by chelle

Sheppard/McKay established, Sheppard/McKay/Alternate McKay one-shot.

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Something in the Water by Luthien

"Are you sure this is such a good idea?" Rodney said again. "What if the neighbours see us?"

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Sparks by asyouleft

“What you mean is, now that we don’t have to keep it a secret, you don’t think we’ll have sparks?”

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Stand on Guard by eternallycait

Rodney gets lost in a cave. While only a moment passes for him, 10 years pass for everyone else.

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Staying Up by beachlass

John is slumped in the armchair sleeping, his glasses sliding down his nose, his book sliding down his lap.

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Steady State by thedeadparrot

Things that can be found in the apartment of M. Rodney McKay Ph.D. Ph.D. Remix of Catalysis for Dummies

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Strong Engough to Be My Man by telesilla

John can't really imagine safewording over anything that could happen in a spa, but then again, he has no idea what Rodney's planned for him.

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Sunrise, Sunset by Pollitt

"Just because I'm sleeping with you doesn't mean you're allowed to wake me up at ungodly-- Oh. Oh."

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Tables Turned by Tzzzz

"That's it, I am not giving the kangaroos and the bees talk to the two of you. Go traumatize Carson instead!" Prequel: Once There Was a Man Named Holland. Sequel: Not a Henry

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Takedown by mific

So many things make Rodney angry.

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Ten Minutes by melagan

They didn't have to be at the meeting for another 10 minutes. Plenty of time.

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The Alchemy of Sin by telesilla

Rodney takes the advantage of a vacation to inflict some heavy pain on John. (On Dreamwidth.)

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The Bare Necessities of Life by Pollitt

"Uncle John, come too," Madison says sleepily, lifting her arm from Rodney's shoulder and reaching toward John.

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The Best Part of Waking Up by Lady Anne

He knew that he was necessary to their survival. He’d never been necessary to a person before.

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The Brribe - Book 2 by Fenchurch WIP

Continuation of The Bribe -- Rodney is given to John as a slave to entice John to go to Atlantis. Book 2 is their story in Pegasus.

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The Citrus Effect by Selenic (selenic76)

What if Rodney's reaction to citrus was of a different nature...

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The Egg Episode by laura_redcloud

They have to take care of eggs which represent babies.

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The Fourteenth of Green by kanata, kyuuketsukirui

It has been three weeks. Rodney marks another line on the wall. These ones are in red, a clean break to mark the days without John.

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The Fourth Part of the Night by siriaeve

But he knows that for six days, fifteen hours, nine minutes and an eternity of seconds, John is a couple of hundred yards and a solid wall of metal and marble away from them, from him.

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The Kids Are Alright by nakedwesley

Big Bang 2008. Forks in the Road: Outcast - John goes back to Earth with Rodney in addition to Ronon.

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The Letter with the Alternate Slash Ending by Ellex

Link to the alternate ending which has the link to the other parts.

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The Morning After by sheafrotherdon

"Did you just say braaaaaains?" John asks.

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The Observer by Master Elayna

A man on the run kidnaps a couple on Christmas Eve.
Secondary pairings: Jeannie/Kaleb Miller, Dave/Helen Sheppard, Ronon Dex/Teyla Emmagan, Evan Lorne/Radek Zelenka

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The Origin of All Things by chocolatephysicist

Rodney McKay/John Sheppard, Radek Zelenka/Daniel Jackson, Elizabeth Weir/Stephen Caldwell, Teyla Emmagan/Ronon Dex, Carson Beckett/Major Lorne, Sam Carter/Teal'c, Dr. Kavanagh/Lindsey Novak, and Cameron Mitchell/Carolyn Lam

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The Perils of Kissing John's Boyfriend by lillyjk

John and Rodney go to Earth. Sam greets them.

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The Softness of Light by Claire

Ancient tech makes Carson pregnant with Rodney's child.

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The Ten Commandments of Rodney McKay by Claire

Sheppard/McKay, McKay/Carter past relationship.

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The Things That Matter by Selenic (selenic76)

John brings Rodney coffee, and a late anniversary gift.

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The Triboelectric Effect by trillingstar

"What the hell were you thinking, touching it!" John yells, terrified.

"I didn't mean to!" Rodney yells back. "Oh right, because this morning I thought, let's be sure to get stuck to an unidentified object on an unknown planet in the dark depths of a cave today. Excellent, can't wait!"

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The White Island by Mirabile Dictu

"Jesus, I was imagining all sorts of things, most of them involving you changing your mind."

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The World According to Rover by Rina, Orithain

Ancient intelligent carts. Established from part 2 onwards. Mostly McKay/Sheppard, but with other pairings, some of which have episodes and parts dedicated to them: Beckett/Zelenka, Lorne/Chuck, Cadman/O'Neill!Clone, Grodin/OFC (Lindstrom), Bates/Lindstrom, Weir/Paul Davis, implied Jack/Daniel.

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The World According to Rover 22 - Please Don't Play It Again by Orithain, Rina

Part of the The World According to Rover series. John and Rodney are trapped in a time loop.

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The World According to Rover III: Gender Bender by Orithain, Rina

Part of the The World According to Rover series. John, Rodney and Carson get turned into women.

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The physicist's guide to architecture by solvent90 (solvent)

The first time Rodney actually saw Atlantis, though, what he noticed were the leaks.

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Theory of Evolution by lavvyan

John survives, but he doesn't revert back to human. Stuck with a body he can't accept as his own, John withdraws - and Rodney lets him, certain that all John needs is time. But what if he's wrong?

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These Childish Things by Anyanka

Watching Rodney's eye twitch as he tried to keep his temper and decipher Torren's weirdly logical but truly baffling requests was a joy. Followed by: Deep are the thoughts of a Child

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These Pages are Burning by deltacephei

This Wraith queen was different....

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Things Not Seen by Rageprufrock (Glitterati)

John's father met his mother on the Santa Monica pier, eating a Sno Cone with her mouth purple-blue.

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Things being various by solvent90 (solvent)

Rodney can't even begin to explain to them how much they don't get it.

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Things to Be Said by Mirabile Dictu

He also noticed that she didn't look the least bit surprised that her CSO and the military commander of Atlantis had just kissed goodbye.

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Thought Control by telesilla

"Hey Rodney?" John moved in closer, meeting Rodney's eyes when he opened them again. "Anyone ever mention the concept of safewords to you?"

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Through Innocent Eyes by noxnoctisanima

They never noticed the changes in themselves until they saw themselves through the eyes of another.

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To Serve And Protect by Lenore

John Sheppard/Elizabeth Weir, Rodney McKay/John Sheppard, implied John Sheppard/everybody
Right or wrong, things had always been the way they were, the intelligentsia ruling and the military serving.

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Together by wpadmirer

They hadn't noticed they were together until someone else asked them how long they'd been a couple.

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Too Good by Crysothemis

It shouldn't have worked for him; it didn't work for him, but the damn gentleness made his flagging erection perk back up, anyway.

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Too Good (the YKIOK,IJNMK remix) by telesilla

So apparently their whole relationship was based on a lie.

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Torren Land by sheafrotherdon

"Torren Land has grasshoppers," Torren says as if that settles everything, and Rodney supposes it sort of does. "For hopping grasses."

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Toy Drums & Soldiers by Icarus (Icarusancalion)

The Atlantis expedition exchanges Christmas gifts, banter, and inside jokes.

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Trading Partners by Springwoof

To trade with the people of Tiobash, they have to impregnate three women each.

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Tree Lined Road by siriaeve

Whatever he's had to give up, whatever doors are closed to both of them now, he smiles like he's home, and John can't help leaning in to kiss him.

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Two Left Feet by almostnever (Cesare)

Domesticity on Atlantis: it's not all bigger beds and sparkly curtains.

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Two and Two by thiscanbegin

"One genius isn't enough for you, so you've got to hit on mine?!" Hints to Lorne/McKay and Lorne/Radek

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Universe in a Box by outsideth3box

"I told you I didn’t want to do the birthday thing. What is...?"

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Unspoken by murron

Rodney doesn't know what to think after John is returned to them.

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Valentine by psychicvanity

John and Rodney find a way to say what they mean without saying a word.

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Variations In D Major by sian1359

Big Bang 2009. Forks in the Road: The Daedalus Variations - A look at one of those other realities the team and ship were jumping through.

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Vigil by Pollitt

Rodney waits... they all wait....

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Waiting is hell by rosiepaw

Blankets. Thick, fleecy blankets. The one that his team-mates were apparently bargaining for was exactly the same colour as his orange fleece.

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Watch the Man by teh_gandu

McKay/Sheppard, unrequited McKay/Sheppard/Beckett.

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Watching by velocitygrass

John is not reading now though. He's watching Rodney.

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Wave by Dianann (ladyflowdi)

This is how John Sheppard kisses: lazy, with a lot of tongue.

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Waylaid at Midway by toomuchplor

What can you do with too small condoms?

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Wedding Day by danvers (dvs)

John and Rodney go back to Earth to get married... if the Wraith allows them to.

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Wedding Duty by Goddess47

John is his usual, articulate self. Good thing Rodney's a genius. Sequel: Uninvited Guests

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What Are You Doing There? by wolfshark (sharkie)

Another wacky Ancient adventure leads to some really good sex.

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What It's All About by secondalto

Aliens made them do it. No, not that. Get your mind out of the gutter.

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What Might Have Been Series by Keira Marcos

Also past McKay/Quinn, McKay/Mitchell, Sheppard/Holland, Sheppard/Mitchell and present O'Neill/Carter, Dave Sheppard/Keller, Mitchell/OMC, Lam/OMC & OMC/OMC.
What if Rodney didn’t go to Atlantis and the city was lost again? Sheppard turns up as the second command of the SGC under Major General Jack O’Neill and after a year of watching the moody government contractor Dr. Rodney McKay… he decides to make some very personal changes in his life.

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Will Never Tell by psychicvanity

I could. But I won't. I never would.

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Winchester Brothers by Epiphanyx7

Which Winchester is better looking?

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You Say it's Your Birthday by Sheppards_girl

McKay/Sheppard (Chapters 1-2), Sheppard/Lorne with McKay watching (Chapter 3), Lorne/Parrish & McKay/Sheppard/Lorne/Parrish (Chapter 4).
Kink: Rape fantasy, chain fuck.

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You're My Lucky Star by kathrynparis

"Congratulations Major Sheppard! You're pregnant," Beckett informed, like it doesn't matter to him one way or the other that John Sheppard, a man, not to mention an Air Force Major is pregnant.

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You're the One by chelle

A vibrating rubber duck, that was either ingenious or really perverse, maybe both.

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Yours, Mine and Ours by neevebrody

"I just thought it would be nice to have one of our family's genes carry on after us."

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Zombies and Blackouts -- Oh My by Catheights

Sometimes the Pegasus galaxy was the ultimate horror show, the fright never ended.

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abicierum by thekatcameback, doublehelix20

One night plus four months, times n for the weight gain, equals one fetus. And onward. Abicierum-- to give up, not to surrender.

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c/o Doctor Rodney McKay by trillingstar

A late-night delivery causes Rodney to go postal on John...'s ass.

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