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(Still) In Hollywood by Idyll

Sequel to In Hollywood. When the request comes in it specifically asks for Sheppard or Ronon. It makes sense for Ronon to go.

Lists: Sheppard/Dex thematic fic index

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A Pinnochio Story by sam_gamgee(aka Adrian)

When Richard Woolsey's mother sends him to live with his dad for his senior year of high school, he is thrown into a completely new element and begins the process of becoming 'a real boy'.

Lists: Rare pairings slash index

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Age of Minority by Bluflamingo

Cam finds that being turned into a teenager isn't what it's cracked up to be.

Lists: Sheppard/Mitchell thematic fic index

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All Hallow's Eve by kisahawklin

How John met Evan Lorne, tarot reader. Part of The Tarot Card Series (McKay/Sheppard).

Lists: Sheppard/Lorne thematic fic index

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All's Well... by sgatlantislight

Jealous: Rodney (NC-17)

Lists: McKay/Beckett thematic fic index

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Are You Done by Jo

Mainly McKay/Sheppard with Beckett/Bates on the side.

Lists: McKay/Sheppard thematic fic index

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As Deep Cries Out To Deep by race_the_ace

John Sheppard had served his country and just wanted to be left alone for the rest of his life. Too bad Rodney McKay had other ideas. So when John moves to Atlantis, at Rodney's behest, he discovers more than the City of the Ancients, he discovers Evan Lorne.

Lists: Sheppard/Lorne thematic fic index

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Broken Series by sgatlantislight

Don't Ask Don't Tell is repealed, but only in Atlantis. Mostly McKay/Sheppard, but with Beckett/Zelenka scenes. Also past McKay/Zelenka.

Lists: McKay/Sheppard thematic fic index

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Century Hotel Series by Tarlan

Crossover with Century Hotel. Michael was David Hewlett's character in that movie. Mostly Century Hotel, crossover with SGA by the end and in the sequel.

Lists: McKay/Sheppard thematic fic index, Joe and David's other roles slash index

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Changed by Cede Lede

What would have happened to the Atlantis crew had Sheppard's condition in Conversion been contagious?

Lists: Rare pairings slash index

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Chopin, Schubert, and Wolfgang Puck by Never

John owns a piano store and Radek's just looking.

Lists: Rare pairings slash index

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Christmas Trilogy by Jalabert

The Atlantis team shares a little Christmas cheer.

Lists: Rare pairings slash index

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City in Flight by Goddess47

They weren't a new threat to Atlantis but they now came at them with a vengeance. John knew they needed help. What they got was more than they had hoped for.

McKay/Sheppard, O'Neill/Jackson, Beckett/Emmagen, Carter/Mitchell, Lorne/Davis

Lists: McKay/Sheppard thematic fic index

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False Accusations by Tarlan

Kavanagh accuses Rodney McKay and John Sheppard of being sexually involved. Jack deals with it. Implied past Daniel/Rodney.

Lists: McKay/Sheppard thematic fic index

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Feet In Your Shoes by busaikko

Ronon doesn't know exactly how old he was when he ran, and he's not sure how long it's been since he lived in a house with a family. It's kind of nice. He knows that technically Teyla's place is a temporary living facility, but it's the best he's ever been in.

Lists: Sheppard/Dex thematic fic index

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Figuring It All Out by bridgie0202

When Lorne walks in by accident, Sheppard gets outted. When Lorne admits to the same, the question becomes how they will deal with each other now.

Lists: Sheppard/Lorne thematic fic index

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Five headlines which Rodney McKay wishes to assure you have absolutely nothing to do with Ronon Dex and John Sheppard having sex. by Leanne

Ronon's a star NBA player and John's the hustler he picks up in a club one night. Ronon's agent, Rodney, throws a fit and insists that Ronon date pop star Teyla because "basketball isn't ice skating and anyway America really doesn't like queer sports stars." Wacky hijinks ensue when Rodney falls for Teyla, and Ronon and John prove to be terrible at being discreet.

Lists: Sheppard/Dex thematic fic index

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Heisenberg's Wedding by justhuman

In January 2009, Atlantis landed in the Pacific Ocean and was moved to a location near San Francisco. John Sheppard and Cam Mitchell took advantage of being in the same galaxy and began sharing an apartment near the SGC " well, sharing more than just an apartment. By May 2009, they decided that they needed something more. They told and retired from the Air Force to start Sheppard-Mitchell Aviation in South Dakota. Why South Dakota? You'd have to ask John, but it sounded like a better idea to Cam than John's other top pick, Alaska. Life moves on.

Lists: Sheppard/Mitchell thematic fic index

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In The Aftermath by vipersweb

A sense of home and family bring them together, even if 'home' is still a galaxy away.

Lists: Rare pairings slash index

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Like You Back by keefaq

The camping trip goes okay but the homecoming is better. Good things do happen sometimes.

Lists: Sheppard/Dex thematic fic index

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Lost For Words by Katt

Aiden is in a relationship with Teyla and John's with Rodney, but there are things that John needs from Aiden and Aiden alone.

Lists: Rare pairings slash index

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Make The Devil Feel Surprise by telesilla

In a dark mirror universe of our own, sixteen year old Rodney McKay is brought to Atlantis by the Chief Science Officer, his older sister Jeannie, after their parents die. While Jeannie has no real use for Rodney, Colonel Sheppard does. Now Rodney has to come to terms with the fact that not only is he Sheppard's boy toy, but also that Sheppard is a moody, paranoid sadist.

For his part, John isn't quite sure what to make of Rodney, who is an almost too perfect match for him. Just as he and Rodney carefully start to settle into a complicated relationship, a conspiracy begins to surface, forcing Rodney to take a stand.

Also Jeannie McKay/Ronon.

Lists: McKay/Sheppard thematic fic index

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Mirror, Mirror, On The Wall by Tarlan

Past McKay/Jonas Quinn, Sheppard/Carter in the AU.
An Ancient device exchanges John with his counterpart in another dimension.

Lists: McKay/Sheppard thematic fic index

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Neverland by race_the_ace

Sequel to The Only One. Just because they're married doesn't mean that John's issues have magically disappeared.

Lists: Sheppard/Mitchell thematic fic index

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No Lighter Burden, Nor More Agreeable by infinimato

When SG-1 comes to Atlantis, it brings an old relationship back into Lorne's life.

Lists: Sheppard/Lorne thematic fic index

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On A Wing And A Prayer by Jalabert

It takes nearly losing Aiden to make John come to terms with his feelings.

Lists: Rare pairings slash index

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Orientation by jenna_thorn

Series of connected ficlets centered on the word 'orientation'; secondary Sheppard/Dex

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Out into the real world by Mithreon

Fusion with The Matrix. McKay/Sheppard, implied Weir/Caldwell, past Sheppard/Weir, Halling/Teyla, Ronon/Teyla UST.

Lists: McKay/Sheppard thematic fic index

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Palms and Eyes Open Wide by race_the_ace

Aliens made them drink, the drinking made them do pretty much everything else. Part of the Being Connor Sheppard-Davies series.

Lists: Rare pairings slash index

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Pegasus B by Various authors

An AU universe with several off-shots. One of them is Daniel/Rodney -> Daniel/Rodney/Sheppard -> Rodney/Sheppard & Jack/Daniel. See the Pegasus B Story Guide.

Lists: McKay/Sheppard thematic fic index, Threesomes and moresomes master list

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Planet of the Weevils by moodymuse19

McKay/Sheppard, vague Jack/Ianto, UST Jack/Rodney

Lists: McKay/Sheppard thematic fic index

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Quiet Halls by SGA_LOVER

Major Lorne has found himself in a abusive (hitting/rape)relationship, Col. Sheppard finds out. Can the Col save him (the man he secretly loves) or will he be lost.

Lists: Sheppard/Lorne thematic fic index

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Reception by Bluflamingo

Prompt: John/Cam + Colby/Lorne, being around fellow canon characters and not having to hide their relationship. Part of the What Happens Next verse.

Lists: Sheppard/Mitchell thematic fic index

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Remote Control by Damion Starr

You can't stay in control of every situation. (Ford/Steve, Sheppard/Ford).

Lists: Rare pairings slash index

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Snakes and lawyers 'verse by Yin (yin_again)

Crossover between Stargate Atlantis, First Monday (where Joe Flanigan played Julian Lodge) and Boa vs. Python (where David Hewlett played Dr. Emmett). McKay/Sheppard and Lodge/Emmett are the main pairings, but the series also features McKay/Lodge, McKay/Sheppard/Lodge & McKay/Lodge/Emmett.

Lists: McKay/Sheppard thematic fic index, Threesomes and moresomes master list, Joe and David's other roles slash index

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Square Peg, Round Hole by sharkie335

When the Ori overrun Earth, some of the SGC evacuate to Atlantis, where they're just not fitting in. This causes serious issues.

Lists: McKay/Sheppard thematic fic index

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The Big Gay History of the World by Rachael Sabotini

John is a sheltered scholar. Rodney is the boyfriend of a mafia boss.

Lists: McKay/Sheppard thematic fic index

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The Brightest Star of Ages Yet To Be by kyrdwyn

Beckett/Larrin, Lorne/OFC, Parrish/OFC, Sumner/Marilyn

Lists: Rare pairings slash index

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The Connection by Keikokin

There's a reason John Sheppard has the ATA gene. And that reason is Jack O'Neill. McKay/Sheppard first time, Jack/Daniel established, Sam/Radek first time, Hammond/Weir implied, implied Jack/John's mother-cheating.

Lists: McKay/Sheppard thematic fic index

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The Deconstruction of Falling Stars by kyizi

Atlantis is stranded in a strange new galaxy with no way of returning to either Earth or Pegasus, John is missing and presumed dead, and just when Cam thinks that he's finally getting used to the status quo, things get worse.

Lists: Sheppard/Mitchell thematic fic index

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The Origin of All Things by chocolatephysicist

Rodney McKay/John Sheppard, Radek Zelenka/Daniel Jackson, Elizabeth Weir/Stephen Caldwell, Teyla Emmagan/Ronon Dex, Carson Beckett/Major Lorne, Sam Carter/Teal'c, Dr. Kavanagh/Lindsey Novak, and Cameron Mitchell/Carolyn Lam

Lists: McKay/Sheppard thematic fic index

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The Pandora Effect by Icarus (Icarusancalion)

Woolsey starts getting midnight visits from Sheppard, only, the colonel never seem to acknowledge their trysts during the daytime... (ends Woolsey/Zelenka, McKay/Sheppard)

Lists: McKay/Sheppard thematic fic index, Rare pairings slash index

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The Prisoner of Zenda by eotu

McKay/Sheppard with bits of Weir/Kolya, Weir/Zelenka, and Dex/Teyla. Based on the movie "The Prisoner of Zenda".

Lists: McKay/Sheppard thematic fic index

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The Rejects From McMurdo by cinaed

Rodney's in a band. Radek goes to see their concert. Also Sheppard/Weir, Ronon/Teyla Emmagan. Sequel: The next time you listen to Borodin

Lists: McKay/Zelenka thematic fic index

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The Scientific Process by James Walkswithwind

John is going about this very systematically.

Lists: Rare pairings slash index

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The Sentinel And Guide Of Atlantis by Belladonna

Missing scene: Mt. Rushmore Or Bust. Crossover with The Sentinel. McKay/Sheppard (first time in the missing scene), Jim/Blair, Jack/Daniel, one time Jim/Blair/Daniel.

Lists: McKay/Sheppard thematic fic index

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The Sentinels of Atlantis by Keira Marcos

While the main focus of this series is the slash pairing of Sheppard/McKay there are secondary het pairings. The pairings that appear in the series: John Sheppard/Rodney McKay, Cameron Mitchell/Vala Mal Doran, Jennifer Keller/Evan Lorne, Teyla Emmagen/Ronon Dex, Sam Carter/Daniel Jackson, Laura Cadman/Aidan Ford, James Stackhouse/Thomas Markham, and Radek Zelenka/David Parrish.
Sentinel John Sheppard thought he’d spend his life unbonded and then he met Dr. Rodney McKay. The mission to Atlantis is their mutual path and they will gather the strongest, brightest, and best for the mission that will take them to another galaxy.

Lists: McKay/Sheppard thematic fic index

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The World According to Rover by Rina, Orithain

Ancient intelligent carts. Established from part 2 onwards. Mostly McKay/Sheppard, but with other pairings, some of which have episodes and parts dedicated to them: Beckett/Zelenka, Lorne/Chuck, Cadman/O'Neill!Clone, Grodin/OFC (Lindstrom), Bates/Lindstrom, Weir/Paul Davis, implied Jack/Daniel.

Lists: McKay/Sheppard thematic fic index, Rare pairings slash index

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The Wrong Carter by Belladonna

Also implied past Rodney/Jack Carter and current Jack Carter/Nathan Stark.

Lists: McKay/Sheppard thematic fic index

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Thin Thread Left by Bluflamingo

People talk about this as a victory, but to John it feels like defeat; the end of their first decade in the city

Lists: Sheppard/Mitchell thematic fic index

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Trajectories of Two Moving Bodies by scrollgirl

Dr John Sheppard, the newest member of the SGC, has to deal with an embarrassing case of hero-worship when he finally meets Colonel Cameron Mitchell, leader of SG-1. But what if the attraction goes both ways?

Lists: Sheppard/Mitchell thematic fic index

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We Make a Sky Where We May Be by penknife

John Sheppard doesn't believe in second chances, but it's possible that he might get one in Atlantis anyway.

Lists: Rare pairings slash index

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What It's Made by Bluflamingo

Ronon has been on tour with the Satedan acting troupe for months. His friends celebrate his return with a party.

Lists: Sheppard/Dex thematic fic index

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What Might Have Been Series by Keira Marcos

Also past McKay/Quinn, McKay/Mitchell, Sheppard/Holland, Sheppard/Mitchell and present O'Neill/Carter, Dave Sheppard/Keller, Mitchell/OMC, Lam/OMC & OMC/OMC.
What if Rodney didn’t go to Atlantis and the city was lost again? Sheppard turns up as the second command of the SGC under Major General Jack O’Neill and after a year of watching the moody government contractor Dr. Rodney McKay… he decides to make some very personal changes in his life.

Lists: McKay/Sheppard thematic fic index

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You Belong With Me by Gamilaroi

John Sheppard and Darcy O'Neill have strong feelings for each other, but must surpress them due to both being in the USAF. When a machine is discovered off world everything changes for both men.

Lists: Rare pairings slash index

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eat up, get stronger, think and hope by busaikko

John kept dying, and the bastards kept bringing him back.

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